Exercise 4: PSI-BLAST and Multiple Sequence Alignments(6/5/2007)

 Relevant links for exercise:

NCBI BLAST:  http://www.ncbi.nlm.nih.gov/BLAST/

cyrpto_protein for the tutorial

CryptoProtein_swissprot.txt

CryptoPSSM.txt

CryptoPSSM_swissprot.txt

Uncharacterized yeast protein for exercise 4-2

GLOBIN sequences

JALVIEW JAVA Alignment Viewer

Zebrafish CA proteins

Eukaryotic CA protein alignment

Crimson text editor (for PC): http://www.crimsoneditor.com/
TextWrangler2 (for MacOS): http://www.barebones.com/products/textwrangler/

 Exercise (word format):

BBSG597_exercise4.doc

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