Cryptococcus BLAST Search

Database to search   

SeroD contigs (from Stanford)
Whitehead H99 contigs (6/19/03)

BLAST program 

 

Query

Database

 

blastn

DNA

DNA

blastp

AA

AA

blastx

trans DNA

AA

tblastn

AA

trans DNA

tblastx

trans DNA

trans DNA

 

E- value cutoff  

  (e.g. 1e-10)

Query sequence   

 
  
 

This pipeline utilizes BioPerl:

Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JGR, Korf I, Lapp H, Lehvaslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka ED, Wilkinson M, Birney E. The Bioperl Toolkit: Perl modules for the life sciences. Genome Research. 2002 Oct;12(10):1161-8.